J5_6ZP4_002

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZP4|1|2|C|30
6ZP4|1|2|U|31
6ZP4|1|2|U|32
6ZP4|1|2|G|33
6ZP4|1|2|U|34
*
6ZP4|1|2|A|521
6ZP4|1|2|A|522
6ZP4|1|2|A|523
6ZP4|1|2|U|524
6ZP4|1|2|A|525
6ZP4|1|2|A|526
6ZP4|1|2|C|527
*
6ZP4|1|2|G|558
6ZP4|1|2|G|559
6ZP4|1|2|A|560
6ZP4|1|2|A|561
6ZP4|1|2|U|562
6ZP4|1|2|G|563
6ZP4|1|2|A|564
6ZP4|1|2|G|565
*
6ZP4|1|2|C|585
6ZP4|1|2|G|586
6ZP4|1|2|A|587
6ZP4|1|2|G|588
6ZP4|1|2|G|589
6ZP4|1|2|A|590
6ZP4|1|2|U|591
6ZP4|1|2|C|592
6ZP4|1|2|C|593
6ZP4|1|2|A|594
6ZP4|1|2|U|595
*
6ZP4|1|2|A|641
6ZP4|1|2|U|642
6ZP4|1|2|A|643
6ZP4|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Eukaryotic translation initiation factor 3 subunit B

Chain T

40S ribosomal protein S30

Chain c

40S ribosomal protein S9

Chain j

40S ribosomal protein S23