J5_6ZP4_004

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

6ZP4|1|2|G|126, 6ZP4|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZP4|1|2|G|123
6ZP4|1|2|U|124
6ZP4|1|2|C|125
6ZP4|1|2|G|126
6ZP4|1|2|C|127
6ZP4|1|2|U|128
6ZP4|1|2|C|129
*
6ZP4|1|2|G|183
6ZP4|1|2|G|184
6ZP4|1|2|G|185
*
6ZP4|1|2|U|214
6ZP4|1|2|G|215
*
6ZP4|1|2|C|310
6ZP4|1|2|C|311
6ZP4|1|2|G|312
*
6ZP4|1|2|C|337
6ZP4|1|2|G|338
6ZP4|1|2|A|339
6ZP4|1|2|C|340
6ZP4|1|2|C|341

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain q

40S ribosomal protein S4, X isoform

Chain r

40S ribosomal protein S6

Chain t

40S ribosomal protein S8