J5_6ZQC_001
3D structure
- PDB id
- 6ZQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUUACUAG*CAAUCUAUUUCAAAGAAUUCAAACUUG*CUCUCAA*UAG*CAAAAGAGC
- Length
- 55 nucleotides
- Bulged bases
- 6ZQC|1|D2|U|294, 6ZQC|1|D2|A|295, 6ZQC|1|D2|C|296, 6ZQC|1|D2|U|297, 6ZQC|1|D2|A|298, 6ZQC|1|D2|A|309, 6ZQC|1|D2|A|313, 6ZQC|1|D2|A|322, 6ZQC|1|D2|U|325, 6ZQC|1|D2|C|326, 6ZQC|1|D2|A|329, 6ZQC|1|D2|C|330, 6ZQC|1|D2|U|331, 6ZQC|1|D2|U|332, 6ZQC|1|D2|A|396, 6ZQC|1|D2|A|461
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZQC|1|D2|G|291
6ZQC|1|D2|A|292
6ZQC|1|D2|U|293
6ZQC|1|D2|U|294
6ZQC|1|D2|A|295
6ZQC|1|D2|C|296
6ZQC|1|D2|U|297
6ZQC|1|D2|A|298
6ZQC|1|D2|G|299
*
6ZQC|1|D2|C|307
6ZQC|1|D2|A|308
6ZQC|1|D2|A|309
6ZQC|1|D2|U|310
6ZQC|1|D2|C|311
6ZQC|1|D2|U|312
6ZQC|1|D2|A|313
6ZQC|1|D2|U|314
6ZQC|1|D2|U|315
6ZQC|1|D2|U|316
6ZQC|1|D2|C|317
6ZQC|1|D2|A|318
6ZQC|1|D2|A|319
6ZQC|1|D2|A|320
6ZQC|1|D2|G|321
6ZQC|1|D2|A|322
6ZQC|1|D2|A|323
6ZQC|1|D2|U|324
6ZQC|1|D2|U|325
6ZQC|1|D2|C|326
6ZQC|1|D2|A|327
6ZQC|1|D2|A|328
6ZQC|1|D2|A|329
6ZQC|1|D2|C|330
6ZQC|1|D2|U|331
6ZQC|1|D2|U|332
6ZQC|1|D2|G|333
*
6ZQC|1|D2|C|391
6ZQC|1|D2|U|392
6ZQC|1|D2|C|393
6ZQC|1|D2|U|394
6ZQC|1|D2|C|395
6ZQC|1|D2|A|396
6ZQC|1|D2|A|397
*
6ZQC|1|D2|U|460
6ZQC|1|D2|A|461
6ZQC|1|D2|G|462
*
6ZQC|1|D4|C|54
6ZQC|1|D4|A|55
6ZQC|1|D4|A|56
6ZQC|1|D4|A|57
6ZQC|1|D4|A|58
6ZQC|1|D4|G|59
6ZQC|1|D4|A|60
6ZQC|1|D4|G|61
6ZQC|1|D4|C|62
Current chains
- Chain D2
- 5ETS RNA
- Chain D4
- U3 snoRNA
Nearby chains
- Chain CE
- Nucleolar protein 58
- Chain CI
- U3 small nucleolar ribonucleoprotein protein IMP3
- Chain CJ
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain CK
- U3 small nucleolar RNA-associated protein MPP10
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain JN
- Protein FAF1
- Chain UA
- Periodic tryptophan protein 2
- Chain UG
- U3 small nucleolar RNA-associated protein 7
- Chain UK
- U3 small nucleolar RNA-associated protein 11
- Chain UN
- U3 small nucleolar RNA-associated protein 14
- Chain UR
- U3 small nucleolar RNA-associated protein 18
- Chain UU
- U3 small nucleolar RNA-associated protein 21
- Chain UX
- rRNA-processing protein FCF1
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