J5_6ZQD_001

3D structure

PDB id

6ZQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6ZQD|1|D3|C|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQD|1|D3|C|31
6ZQD|1|D3|U|32
6ZQD|1|D3|U|33
6ZQD|1|D3|G|34
6ZQD|1|D3|U|35
*
6ZQD|1|D3|A|473
6ZQD|1|D3|A|474
6ZQD|1|D3|A|475
6ZQD|1|D3|U|476
6ZQD|1|D3|A|477
6ZQD|1|D3|A|478
6ZQD|1|D3|C|479
*
6ZQD|1|D3|G|509
6ZQD|1|D3|G|510
6ZQD|1|D3|A|511
6ZQD|1|D3|A|512
6ZQD|1|D3|U|513
6ZQD|1|D3|G|514
6ZQD|1|D3|A|515
6ZQD|1|D3|G|516
*
6ZQD|1|D3|C|536
6ZQD|1|D3|G|537
6ZQD|1|D3|A|538
6ZQD|1|D3|G|539
6ZQD|1|D3|G|540
6ZQD|1|D3|A|541
6ZQD|1|D3|A|542
6ZQD|1|D3|C|543
6ZQD|1|D3|A|544
6ZQD|1|D3|A|545
6ZQD|1|D3|U|546
*
6ZQD|1|D3|A|592
6ZQD|1|D3|U|593
6ZQD|1|D3|A|594
6ZQD|1|D3|G|595

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CH

Ribosomal RNA-processing protein 9

Chain CL

Ribosome biogenesis protein BMS1

Chain DJ

40S ribosomal protein S9-A

Chain DX

40S ribosomal protein S23-A

Chain UC

Something about silencing protein 10