J5_6ZQG_005

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAAUC*GAUG*CGAAU*AUGGUU

Length

48 nucleotides

Bulged bases

6ZQG|1|D3|U|128, 6ZQG|1|D3|C|130, 6ZQG|1|D3|U|132, 6ZQG|1|D3|U|134, 6ZQG|1|D3|A|135, 6ZQG|1|D3|A|140, 6ZQG|1|D3|U|141, 6ZQG|1|D3|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQG|1|D3|A|124
6ZQG|1|D3|U|125
6ZQG|1|D3|A|126
6ZQG|1|D3|G|127
6ZQG|1|D3|U|128
6ZQG|1|D3|U|129
6ZQG|1|D3|C|130
6ZQG|1|D3|C|131
6ZQG|1|D3|U|132
6ZQG|1|D3|U|133
6ZQG|1|D3|U|134
6ZQG|1|D3|A|135
6ZQG|1|D3|C|136
6ZQG|1|D3|U|137
6ZQG|1|D3|A|138
6ZQG|1|D3|C|139
6ZQG|1|D3|A|140
6ZQG|1|D3|U|141
6ZQG|1|D3|G|142
6ZQG|1|D3|G|143
*
6ZQG|1|D3|C|172
6ZQG|1|D3|A|173
6ZQG|1|D3|U|174
6ZQG|1|D3|G|175
6ZQG|1|D3|C|176
6ZQG|1|D3|U|177
6ZQG|1|D3|U|178
6ZQG|1|D3|A|179
6ZQG|1|D3|A|180
6ZQG|1|D3|A|181
6ZQG|1|D3|A|182
6ZQG|1|D3|U|183
6ZQG|1|D3|C|184
*
6ZQG|1|D3|G|201
6ZQG|1|D3|A|202
6ZQG|1|D3|U|203
6ZQG|1|D3|G|204
*
6ZQG|1|D3|C|263
6ZQG|1|D3|G|264
6ZQG|1|D3|A|265
6ZQG|1|D3|A|266
6ZQG|1|D3|U|267
*
6ZQG|1|D3|A|288
6ZQG|1|D3|U|289
6ZQG|1|D3|G|290
6ZQG|1|D3|G|291
6ZQG|1|D3|U|292
6ZQG|1|D3|U|293

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DG

40S ribosomal protein S6-A

Chain DI

40S ribosomal protein S8-A