J5_6ZQG_008

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

6ZQG|1|D3|U|639, 6ZQG|1|D3|U|694, 6ZQG|1|D3|C|696, 6ZQG|1|D3|C|697, 6ZQG|1|D3|U|813, 6ZQG|1|D3|G|815, 6ZQG|1|D3|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQG|1|D3|A|636
6ZQG|1|D3|C|637
6ZQG|1|D3|U|638
6ZQG|1|D3|U|639
6ZQG|1|D3|U|640
6ZQG|1|D3|G|641
*
6ZQG|1|D3|U|693
6ZQG|1|D3|U|694
6ZQG|1|D3|U|695
6ZQG|1|D3|C|696
6ZQG|1|D3|C|697
6ZQG|1|D3|U|698
*
6ZQG|1|D3|A|740
6ZQG|1|D3|C|741
6ZQG|1|D3|U|742
6ZQG|1|D3|U|743
6ZQG|1|D3|U|744
*
6ZQG|1|D3|A|807
6ZQG|1|D3|U|808
6ZQG|1|D3|A|809
6ZQG|1|D3|G|810
6ZQG|1|D3|A|811
6ZQG|1|D3|A|812
6ZQG|1|D3|U|813
6ZQG|1|D3|A|814
6ZQG|1|D3|G|815
6ZQG|1|D3|G|816
6ZQG|1|D3|A|817
*
6ZQG|1|D3|U|854
6ZQG|1|D3|A|855
6ZQG|1|D3|A|856
6ZQG|1|D3|U|857
6ZQG|1|D3|G|858
6ZQG|1|D3|A|859
6ZQG|1|D3|U|860

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DH

40S ribosomal protein S7-A

Chain DL

40S ribosomal protein S11-A

Chain DN

40S ribosomal protein S13

Chain DW

40S ribosomal protein S22-A