J5_6ZTJ_001

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZTJ_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0681

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6ZTJ|1|AA|C|36
6ZTJ|1|AA|U|37
6ZTJ|1|AA|G|38
6ZTJ|1|AA|G|39
*
6ZTJ|1|AA|C|403
6ZTJ|1|AA|G|404
6ZTJ|1|AA|U|405
6ZTJ|1|AA|G|406
*
6ZTJ|1|AA|C|436
6ZTJ|1|AA|U|437
6ZTJ|1|AA|U|438
6ZTJ|1|AA|U|439
6ZTJ|1|AA|C|440
*
6ZTJ|1|AA|G|497
6ZTJ|1|AA|A|498
6ZTJ|1|AA|A|499
6ZTJ|1|AA|G|500
*
6ZTJ|1|AA|C|545
6ZTJ|1|AA|A|546
6ZTJ|1|AA|A|547
6ZTJ|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12