J5_6ZTJ_004

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6ZTJ|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZTJ_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0597

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ZTJ|1|BA|C|47
6ZTJ|1|BA|G|48
6ZTJ|1|BA|A|49
6ZTJ|1|BA|U|50
6ZTJ|1|BA|G|51
6ZTJ|1|BA|A|52
6ZTJ|1|BA|A|53
6ZTJ|1|BA|G|54
*
6ZTJ|1|BA|C|116
6ZTJ|1|BA|G|117
6ZTJ|1|BA|A|118
6ZTJ|1|BA|A|119
6ZTJ|1|BA|U|120
6ZTJ|1|BA|G|121
*
6ZTJ|1|BA|C|130
6ZTJ|1|BA|A|131
*
6ZTJ|1|BA|U|148
6ZTJ|1|BA|A|149
6ZTJ|1|BA|U|150
*
6ZTJ|1|BA|A|176
6ZTJ|1|BA|G|177
6ZTJ|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34