J5_6ZTL_002

3D structure

PDB id

6ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state bound to NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZTL_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0973

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6ZTL|1|AA|C|36
6ZTL|1|AA|U|37
6ZTL|1|AA|G|38
6ZTL|1|AA|G|39
*
6ZTL|1|AA|C|403
6ZTL|1|AA|G|404
6ZTL|1|AA|U|405
6ZTL|1|AA|G|406
*
6ZTL|1|AA|C|436
6ZTL|1|AA|U|437
6ZTL|1|AA|U|438
6ZTL|1|AA|U|439
6ZTL|1|AA|C|440
6ZTL|1|AA|A|441
6ZTL|1|AA|G|442
*
6ZTL|1|AA|C|492
6ZTL|1|AA|A|493
6ZTL|1|AA|G|494
6ZTL|1|AA|A|495
6ZTL|1|AA|A|496
6ZTL|1|AA|G|497
6ZTL|1|AA|A|498
6ZTL|1|AA|A|499
6ZTL|1|AA|G|500
*
6ZTL|1|AA|C|545
6ZTL|1|AA|A|546
6ZTL|1|AA|A|547
6ZTL|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12