J5_6ZTL_004

3D structure

PDB id

6ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state bound to NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6ZTL|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZTL_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0779

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ZTL|1|BA|C|47
6ZTL|1|BA|G|48
6ZTL|1|BA|A|49
6ZTL|1|BA|U|50
6ZTL|1|BA|G|51
6ZTL|1|BA|A|52
6ZTL|1|BA|A|53
6ZTL|1|BA|G|54
*
6ZTL|1|BA|C|116
6ZTL|1|BA|G|117
6ZTL|1|BA|A|118
6ZTL|1|BA|A|119
6ZTL|1|BA|U|120
6ZTL|1|BA|G|121
*
6ZTL|1|BA|C|130
6ZTL|1|BA|A|131
*
6ZTL|1|BA|U|148
6ZTL|1|BA|A|149
6ZTL|1|BA|U|150
*
6ZTL|1|BA|A|176
6ZTL|1|BA|G|177
6ZTL|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34