J5_6ZTM_004

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6ZTM|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZTM_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0702

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ZTM|1|BA|C|47
6ZTM|1|BA|G|48
6ZTM|1|BA|A|49
6ZTM|1|BA|U|50
6ZTM|1|BA|G|51
6ZTM|1|BA|A|52
6ZTM|1|BA|A|53
6ZTM|1|BA|G|54
*
6ZTM|1|BA|C|116
6ZTM|1|BA|G|117
6ZTM|1|BA|A|118
6ZTM|1|BA|A|119
6ZTM|1|BA|U|120
6ZTM|1|BA|G|121
*
6ZTM|1|BA|C|130
6ZTM|1|BA|A|131
*
6ZTM|1|BA|U|148
6ZTM|1|BA|A|149
6ZTM|1|BA|U|150
*
6ZTM|1|BA|A|176
6ZTM|1|BA|G|177
6ZTM|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34