J5_6ZTN_002

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZTN_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0781

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6ZTN|1|AA|C|36
6ZTN|1|AA|U|37
6ZTN|1|AA|G|38
6ZTN|1|AA|G|39
*
6ZTN|1|AA|C|403
6ZTN|1|AA|G|404
6ZTN|1|AA|U|405
6ZTN|1|AA|G|406
*
6ZTN|1|AA|C|436
6ZTN|1|AA|U|437
6ZTN|1|AA|U|438
6ZTN|1|AA|U|439
6ZTN|1|AA|C|440
6ZTN|1|AA|A|441
6ZTN|1|AA|G|442
*
6ZTN|1|AA|C|492
6ZTN|1|AA|A|493
6ZTN|1|AA|G|494
6ZTN|1|AA|A|495
6ZTN|1|AA|A|496
6ZTN|1|AA|G|497
6ZTN|1|AA|A|498
6ZTN|1|AA|A|499
6ZTN|1|AA|G|500
*
6ZTN|1|AA|C|545
6ZTN|1|AA|A|546
6ZTN|1|AA|A|547
6ZTN|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12