J5_6ZTN_004

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6ZTN|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZTN_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0853

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ZTN|1|BA|C|47
6ZTN|1|BA|G|48
6ZTN|1|BA|A|49
6ZTN|1|BA|U|50
6ZTN|1|BA|G|51
6ZTN|1|BA|A|52
6ZTN|1|BA|A|53
6ZTN|1|BA|G|54
*
6ZTN|1|BA|C|116
6ZTN|1|BA|G|117
6ZTN|1|BA|A|118
6ZTN|1|BA|A|119
6ZTN|1|BA|U|120
6ZTN|1|BA|G|121
*
6ZTN|1|BA|C|130
6ZTN|1|BA|A|131
*
6ZTN|1|BA|U|148
6ZTN|1|BA|A|149
6ZTN|1|BA|U|150
*
6ZTN|1|BA|A|176
6ZTN|1|BA|G|177
6ZTN|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34