J5_6ZTO_004

3D structure

PDB id

6ZTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6ZTO|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZTO_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0412

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ZTO|1|BA|C|47
6ZTO|1|BA|G|48
6ZTO|1|BA|A|49
6ZTO|1|BA|U|50
6ZTO|1|BA|G|51
6ZTO|1|BA|A|52
6ZTO|1|BA|A|53
6ZTO|1|BA|G|54
*
6ZTO|1|BA|C|116
6ZTO|1|BA|G|117
6ZTO|1|BA|A|118
6ZTO|1|BA|A|119
6ZTO|1|BA|U|120
6ZTO|1|BA|G|121
*
6ZTO|1|BA|C|130
6ZTO|1|BA|A|131
*
6ZTO|1|BA|U|148
6ZTO|1|BA|A|149
6ZTO|1|BA|U|150
*
6ZTO|1|BA|A|176
6ZTO|1|BA|G|177
6ZTO|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34