J5_6ZTP_002

3D structure

PDB id

6ZTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 6

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZTP_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0525

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6ZTP|1|AA|C|36
6ZTP|1|AA|U|37
6ZTP|1|AA|G|38
6ZTP|1|AA|G|39
*
6ZTP|1|AA|C|403
6ZTP|1|AA|G|404
6ZTP|1|AA|U|405
6ZTP|1|AA|G|406
*
6ZTP|1|AA|C|436
6ZTP|1|AA|U|437
6ZTP|1|AA|U|438
6ZTP|1|AA|U|439
6ZTP|1|AA|C|440
6ZTP|1|AA|A|441
6ZTP|1|AA|G|442
*
6ZTP|1|AA|C|492
6ZTP|1|AA|A|493
6ZTP|1|AA|G|494
6ZTP|1|AA|A|495
6ZTP|1|AA|A|496
6ZTP|1|AA|G|497
6ZTP|1|AA|A|498
6ZTP|1|AA|A|499
6ZTP|1|AA|G|500
*
6ZTP|1|AA|C|545
6ZTP|1|AA|A|546
6ZTP|1|AA|A|547
6ZTP|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12