J5_6ZUO_001

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAUU*AAUAG

Length

28 nucleotides

Bulged bases

6ZUO|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZUO|1|2|C|30
6ZUO|1|2|U|31
6ZUO|1|2|U|32
6ZUO|1|2|G|33
6ZUO|1|2|U|34
*
6ZUO|1|2|A|521
6ZUO|1|2|A|522
6ZUO|1|2|A|523
6ZUO|1|2|U|524
6ZUO|1|2|A|525
6ZUO|1|2|A|526
6ZUO|1|2|C|527
*
6ZUO|1|2|G|558
6ZUO|1|2|G|559
6ZUO|1|2|A|560
6ZUO|1|2|A|561
6ZUO|1|2|U|562
6ZUO|1|2|G|563
*
6ZUO|1|2|C|592
6ZUO|1|2|C|593
6ZUO|1|2|A|594
6ZUO|1|2|U|595
6ZUO|1|2|U|596
*
6ZUO|1|2|A|640
6ZUO|1|2|A|641
6ZUO|1|2|U|642
6ZUO|1|2|A|643
6ZUO|1|2|G|644

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30