J5_6ZV6_003

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGCUCG*CGGG*UG*CCG*CGA

Length

19 nucleotides

Bulged bases

6ZV6|1|2|G|126, 6ZV6|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZV6|1|2|U|124
6ZV6|1|2|C|125
6ZV6|1|2|G|126
6ZV6|1|2|C|127
6ZV6|1|2|U|128
6ZV6|1|2|C|129
6ZV6|1|2|G|130
*
6ZV6|1|2|C|182
6ZV6|1|2|G|183
6ZV6|1|2|G|184
6ZV6|1|2|G|185
*
6ZV6|1|2|U|214
6ZV6|1|2|G|215
*
6ZV6|1|2|C|310
6ZV6|1|2|C|311
6ZV6|1|2|G|312
*
6ZV6|1|2|C|337
6ZV6|1|2|G|338
6ZV6|1|2|A|339

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8