J5_6ZVH_001

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAACA*UGGAAUGAG*CGAGGAUCCAU*AUAG

Length

37 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVH|1|2|C|30
6ZVH|1|2|U|31
6ZVH|1|2|U|32
6ZVH|1|2|G|33
6ZVH|1|2|U|34
*
6ZVH|1|2|A|521
6ZVH|1|2|A|522
6ZVH|1|2|A|523
6ZVH|1|2|U|524
6ZVH|1|2|A|525
6ZVH|1|2|A|526
6ZVH|1|2|C|527
6ZVH|1|2|A|528
*
6ZVH|1|2|U|557
6ZVH|1|2|G|558
6ZVH|1|2|G|559
6ZVH|1|2|A|560
6ZVH|1|2|A|561
6ZVH|1|2|U|562
6ZVH|1|2|G|563
6ZVH|1|2|A|564
6ZVH|1|2|G|565
*
6ZVH|1|2|C|585
6ZVH|1|2|G|586
6ZVH|1|2|A|587
6ZVH|1|2|G|588
6ZVH|1|2|G|589
6ZVH|1|2|A|590
6ZVH|1|2|U|591
6ZVH|1|2|C|592
6ZVH|1|2|C|593
6ZVH|1|2|A|594
6ZVH|1|2|U|595
*
6ZVH|1|2|A|641
6ZVH|1|2|U|642
6ZVH|1|2|A|643
6ZVH|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30

Chain i

Endothelial differentiation-related factor 1