J5_6ZVJ_002

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVJ|1|2|C|30
6ZVJ|1|2|U|31
6ZVJ|1|2|U|32
6ZVJ|1|2|G|33
6ZVJ|1|2|U|34
*
6ZVJ|1|2|A|521
6ZVJ|1|2|A|522
6ZVJ|1|2|A|523
6ZVJ|1|2|U|524
6ZVJ|1|2|A|525
6ZVJ|1|2|A|526
6ZVJ|1|2|C|527
*
6ZVJ|1|2|G|558
6ZVJ|1|2|G|559
6ZVJ|1|2|A|560
6ZVJ|1|2|A|561
6ZVJ|1|2|U|562
6ZVJ|1|2|G|563
6ZVJ|1|2|A|564
6ZVJ|1|2|G|565
*
6ZVJ|1|2|C|585
6ZVJ|1|2|G|586
6ZVJ|1|2|A|587
6ZVJ|1|2|G|588
6ZVJ|1|2|G|589
6ZVJ|1|2|A|590
6ZVJ|1|2|U|591
6ZVJ|1|2|C|592
6ZVJ|1|2|C|593
6ZVJ|1|2|A|594
6ZVJ|1|2|U|595
*
6ZVJ|1|2|A|641
6ZVJ|1|2|U|642
6ZVJ|1|2|A|643
6ZVJ|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Eukaryotic translation initiation factor 3 subunit B

Chain G

Eukaryotic translation initiation factor 3 subunit J

Chain T

40S ribosomal protein S30

Chain c

40S ribosomal protein S9

Chain j

40S ribosomal protein S23