J5_6ZVJ_005

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCGAU*ACGACC

Length

23 nucleotides

Bulged bases

6ZVJ|1|2|G|126, 6ZVJ|1|2|C|127, 6ZVJ|1|2|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVJ|1|2|G|123
6ZVJ|1|2|U|124
6ZVJ|1|2|C|125
6ZVJ|1|2|G|126
6ZVJ|1|2|C|127
6ZVJ|1|2|U|128
6ZVJ|1|2|C|129
*
6ZVJ|1|2|G|183
6ZVJ|1|2|G|184
6ZVJ|1|2|G|185
*
6ZVJ|1|2|U|214
6ZVJ|1|2|G|215
*
6ZVJ|1|2|C|310
6ZVJ|1|2|C|311
6ZVJ|1|2|G|312
6ZVJ|1|2|A|313
6ZVJ|1|2|U|314
*
6ZVJ|1|2|A|336
6ZVJ|1|2|C|337
6ZVJ|1|2|G|338
6ZVJ|1|2|A|339
6ZVJ|1|2|C|340
6ZVJ|1|2|C|341

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain q

40S ribosomal protein S4, X isoform

Chain r

40S ribosomal protein S6

Chain t

40S ribosomal protein S8