J5_6ZVK_001

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUUGUCU*AAAAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

39 nucleotides

Bulged bases

6ZVK|1|K3|G|589, 6ZVK|1|K3|A|590, 6ZVK|1|K3|U|591, 6ZVK|1|K3|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|C|30
6ZVK|1|K3|U|31
6ZVK|1|K3|U|32
6ZVK|1|K3|G|33
6ZVK|1|K3|U|34
6ZVK|1|K3|C|35
6ZVK|1|K3|U|36
*
6ZVK|1|K3|A|519
6ZVK|1|K3|A|520
6ZVK|1|K3|A|521
6ZVK|1|K3|A|522
6ZVK|1|K3|A|523
6ZVK|1|K3|U|524
6ZVK|1|K3|A|525
6ZVK|1|K3|A|526
6ZVK|1|K3|C|527
*
6ZVK|1|K3|G|558
6ZVK|1|K3|G|559
6ZVK|1|K3|A|560
6ZVK|1|K3|A|561
6ZVK|1|K3|U|562
6ZVK|1|K3|G|563
6ZVK|1|K3|A|564
6ZVK|1|K3|G|565
*
6ZVK|1|K3|C|585
6ZVK|1|K3|G|586
6ZVK|1|K3|A|587
6ZVK|1|K3|G|588
6ZVK|1|K3|G|589
6ZVK|1|K3|A|590
6ZVK|1|K3|U|591
6ZVK|1|K3|C|592
6ZVK|1|K3|C|593
6ZVK|1|K3|A|594
6ZVK|1|K3|U|595
*
6ZVK|1|K3|A|641
6ZVK|1|K3|U|642
6ZVK|1|K3|A|643
6ZVK|1|K3|G|644

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain T3

Ribosomal protein S23

Chain d3

Ribosomal protein S9 (Predicted)

Chain s3

40S RIBOSOMAL PROTEIN ES30