J5_6ZVK_002
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CAUGUCUAAG*CUGCGAAUGGC*GAG*CACAU*AAGGCAG
- Length
- 36 nucleotides
- Bulged bases
- 6ZVK|1|K3|A|92, 6ZVK|1|K3|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|K3|C|53
6ZVK|1|K3|A|54
6ZVK|1|K3|U|55
6ZVK|1|K3|G|56
6ZVK|1|K3|U|57
6ZVK|1|K3|C|58
6ZVK|1|K3|U|59
6ZVK|1|K3|A|60
6ZVK|1|K3|A|61
6ZVK|1|K3|G|62
*
6ZVK|1|K3|C|86
6ZVK|1|K3|U|87
6ZVK|1|K3|G|88
6ZVK|1|K3|C|89
6ZVK|1|K3|G|90
6ZVK|1|K3|A|91
6ZVK|1|K3|A|92
6ZVK|1|K3|U|93
6ZVK|1|K3|G|94
6ZVK|1|K3|G|95
6ZVK|1|K3|C|96
*
6ZVK|1|K3|G|434
6ZVK|1|K3|A|435
6ZVK|1|K3|G|436
*
6ZVK|1|K3|C|457
6ZVK|1|K3|A|458
6ZVK|1|K3|C|459
6ZVK|1|K3|A|460
6ZVK|1|K3|U|461
*
6ZVK|1|K3|A|468
6ZVK|1|K3|A|469
6ZVK|1|K3|G|470
6ZVK|1|K3|G|471
6ZVK|1|K3|C|472
6ZVK|1|K3|A|473
6ZVK|1|K3|G|474
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain I5
- 40S ribosomal protein S24
- Chain b3
- 40S ribosomal protein S6
- Chain c3
- 40S ribosomal protein S8
- Chain d3
- Ribosomal protein S9 (Predicted)
- Chain j3
- 40S ribosomal protein S4
- Chain k2
- eL14
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