J5_6ZVK_004
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- AUCUUGG*CCUUGCCUCU*AAGCGUUU*AAUGGAAUAG*CAUGAU
- Length
- 41 nucleotides
- Bulged bases
- 6ZVK|1|K3|C|687, 6ZVK|1|K3|U|689, 6ZVK|1|K3|U|742, 6ZVK|1|K3|U|743, 6ZVK|1|K3|U|747, 6ZVK|1|K3|A|869, 6ZVK|1|K3|U|871, 6ZVK|1|K3|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|K3|A|685
6ZVK|1|K3|U|686
6ZVK|1|K3|C|687
6ZVK|1|K3|U|688
6ZVK|1|K3|U|689
6ZVK|1|K3|G|690
6ZVK|1|K3|G|691
*
6ZVK|1|K3|C|740
6ZVK|1|K3|C|741
6ZVK|1|K3|U|742
6ZVK|1|K3|U|743
6ZVK|1|K3|G|744
6ZVK|1|K3|C|745
6ZVK|1|K3|C|746
6ZVK|1|K3|U|747
6ZVK|1|K3|C|748
6ZVK|1|K3|U|749
*
6ZVK|1|K3|A|794
6ZVK|1|K3|A|795
6ZVK|1|K3|G|796
6ZVK|1|K3|C|797
6ZVK|1|K3|G|798
6ZVK|1|K3|U|799
6ZVK|1|K3|U|800
6ZVK|1|K3|U|801
*
6ZVK|1|K3|A|864
6ZVK|1|K3|A|865
6ZVK|1|K3|U|866
6ZVK|1|K3|G|867
6ZVK|1|K3|G|868
6ZVK|1|K3|A|869
6ZVK|1|K3|A|870
6ZVK|1|K3|U|871
6ZVK|1|K3|A|872
6ZVK|1|K3|G|873
*
6ZVK|1|K3|C|912
6ZVK|1|K3|A|913
6ZVK|1|K3|U|914
6ZVK|1|K3|G|915
6ZVK|1|K3|A|916
6ZVK|1|K3|U|917
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain 32
- 60S RIBOSOMAL PROTEIN EL19
- Chain F3
- ribosomal protein uS15
- Chain G3
- Ribosomal protein S11
- Chain J5
- Ribosomal protein S15a
- Chain P3
- 40S RIBOSOMAL PROTEIN ES7
- Chain T3
- Ribosomal protein S23
- Chain b3
- 40S ribosomal protein S6
- Chain j3
- 40S ribosomal protein S4
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