J5_6ZVK_005
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UG*CGAUGAAG*CGAACG*CG*UA
- Length
- 20 nucleotides
- Bulged bases
- 6ZVK|1|h2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|e2|U|20
6ZVK|1|e2|G|21
*
6ZVK|1|h2|C|35
6ZVK|1|h2|G|36
6ZVK|1|h2|A|37
6ZVK|1|h2|U|38
6ZVK|1|h2|G|39
6ZVK|1|h2|A|40
6ZVK|1|h2|A|41
6ZVK|1|h2|G|42
*
6ZVK|1|h2|C|101
6ZVK|1|h2|G|102
6ZVK|1|h2|A|103
6ZVK|1|h2|A|104
6ZVK|1|h2|C|105
6ZVK|1|h2|G|106
*
6ZVK|1|h2|C|113
6ZVK|1|h2|G|114
*
6ZVK|1|h2|U|136
6ZVK|1|h2|A|137
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain A2
- uL29
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain m2
- 60S RIBOSOMAL PROTEIN UL23
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