J5_6ZVK_007
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6ZVK|1|e2|G|3620, 6ZVK|1|e2|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZVK_007 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1673
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|e2|G|2855
6ZVK|1|e2|C|2856
6ZVK|1|e2|A|2857
6ZVK|1|e2|A|2858
6ZVK|1|e2|G|2859
6ZVK|1|e2|C|2860
6ZVK|1|e2|C|2861
6ZVK|1|e2|G|2862
6ZVK|1|e2|G|2863
*
6ZVK|1|e2|U|2887
6ZVK|1|e2|G|2888
*
6ZVK|1|e2|U|3613
6ZVK|1|e2|G|3614
*
6ZVK|1|e2|C|3618
6ZVK|1|e2|G|3619
6ZVK|1|e2|G|3620
6ZVK|1|e2|A|3621
6ZVK|1|e2|C|3622
6ZVK|1|e2|C|3623
6ZVK|1|e2|A|3624
6ZVK|1|e2|G|3625
6ZVK|1|e2|G|3626
*
6ZVK|1|e2|C|3835
6ZVK|1|e2|A|3836
6ZVK|1|e2|C|3837
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 32
- 60S RIBOSOMAL PROTEIN EL19
- Chain 52
- uL3
- Chain K3
- Small subunit ribosomal RNA; SSU rRNA
- Chain k2
- eL14
- Chain l2
- Ribosomal protein L24
Coloring options: