Loop J5_6ZVK

3D structure

PDB id: 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
Description: The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.49 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 6ZVK|1|e2|A|3908, 6ZVK|1|e2|A|4394, 6ZVK|1|e2|G|4451, 6ZVK|1|e2|U|4452, 6ZVK|1|e2|U|4531, 6ZVK|1|e2|U|4555, 6ZVK|1|e2|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6ZVK|1|e2|A|3903
6ZVK|1|e2|G|3904
6ZVK|1|e2|A|3905
6ZVK|1|e2|A|3906
6ZVK|1|e2|G|3907
6ZVK|1|e2|A|3908
6ZVK|1|e2|C|3909
6ZVK|1|e2|C|3910
*
6ZVK|1|e2|G|4392
6ZVK|1|e2|G|4393
6ZVK|1|e2|A|4394
6ZVK|1|e2|U|4395
6ZVK|1|e2|A|4396
6ZVK|1|e2|A|4397
6ZVK|1|e2|C|4398
6ZVK|1|e2|U|4399
6ZVK|1|e2|G|4400
*
6ZVK|1|e2|C|4444
6ZVK|1|e2|U|4445
6ZVK|1|e2|U|4446
6ZVK|1|e2|C|4447
6ZVK|1|e2|G|4448
6ZVK|1|e2|A|4449
6ZVK|1|e2|U|4450
6ZVK|1|e2|G|4451
6ZVK|1|e2|U|4452
6ZVK|1|e2|C|4453
*
6ZVK|1|e2|G|4528
6ZVK|1|e2|G|4529
6ZVK|1|e2|U|4530
6ZVK|1|e2|U|4531
6ZVK|1|e2|U|4532
6ZVK|1|e2|A|4533
6ZVK|1|e2|G|4534
*
6ZVK|1|e2|U|4552
6ZVK|1|e2|A|4553
6ZVK|1|e2|G|4554
6ZVK|1|e2|U|4555
6ZVK|1|e2|U|4556
6ZVK|1|e2|U|4557

Current chains

Chain e2: 28S RIBOSOMAL RNA

Nearby chains

Chain 52: uL3
Chain 92: 60S RIBOSOMAL PROTEIN UL2
Chain r2: 60S ribosomal protein L29
Chain t2: uL4

J5_6ZVK_008