J5_6ZVK_009
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6ZVK|1|e2|G|3922, 6ZVK|1|e2|A|4376, 6ZVK|1|e2|G|4377, 6ZVK|1|e2|A|4378, 6ZVK|1|e2|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZVK_009 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3091
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ZVK|1|e2|U|3920
6ZVK|1|e2|U|3921
6ZVK|1|e2|G|3922
6ZVK|1|e2|A|3923
*
6ZVK|1|e2|U|4188
6ZVK|1|e2|U|4189
6ZVK|1|e2|U|4190
6ZVK|1|e2|G|4191
*
6ZVK|1|e2|C|4204
6ZVK|1|e2|A|4205
*
6ZVK|1|e2|U|4227
6ZVK|1|e2|G|4228
*
6ZVK|1|e2|C|4375
6ZVK|1|e2|A|4376
6ZVK|1|e2|G|4377
6ZVK|1|e2|A|4378
6ZVK|1|e2|A|4379
6ZVK|1|e2|A|4380
6ZVK|1|e2|A|4381
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain 72
- eL21
- Chain 92
- 60S RIBOSOMAL PROTEIN UL2
- Chain F2
- eL42
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain q2
- uL15
Coloring options: