J5_6ZXD_004

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCUC*GGG*UG*CCG*CG

Length

15 nucleotides

Bulged bases

6ZXD|1|2|G|126, 6ZXD|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXD|1|2|C|125
6ZXD|1|2|G|126
6ZXD|1|2|C|127
6ZXD|1|2|U|128
6ZXD|1|2|C|129
*
6ZXD|1|2|G|183
6ZXD|1|2|G|184
6ZXD|1|2|G|185
*
6ZXD|1|2|U|214
6ZXD|1|2|G|215
*
6ZXD|1|2|C|310
6ZXD|1|2|C|311
6ZXD|1|2|G|312
*
6ZXD|1|2|C|337
6ZXD|1|2|G|338

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8