J5_6ZXG_002

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUA(OMG)

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXG|1|2|C|30
6ZXG|1|2|U|31
6ZXG|1|2|U|32
6ZXG|1|2|G|33
6ZXG|1|2|PSU|34
*
6ZXG|1|2|A|521
6ZXG|1|2|A|522
6ZXG|1|2|A|523
6ZXG|1|2|U|524
6ZXG|1|2|A|525
6ZXG|1|2|A|526
6ZXG|1|2|C|527
*
6ZXG|1|2|G|558
6ZXG|1|2|G|559
6ZXG|1|2|A|560
6ZXG|1|2|A|561
6ZXG|1|2|U|562
6ZXG|1|2|G|563
6ZXG|1|2|A|564
6ZXG|1|2|G|565
*
6ZXG|1|2|C|585
6ZXG|1|2|G|586
6ZXG|1|2|A|587
6ZXG|1|2|G|588
6ZXG|1|2|G|589
6ZXG|1|2|A|590
6ZXG|1|2|U|591
6ZXG|1|2|C|592
6ZXG|1|2|C|593
6ZXG|1|2|A|594
6ZXG|1|2|U|595
*
6ZXG|1|2|A|641
6ZXG|1|2|U|642
6ZXG|1|2|A|643
6ZXG|1|2|OMG|644

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30