J5_6ZXG_004

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

6ZXG|1|2|G|126, 6ZXG|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXG|1|2|G|123
6ZXG|1|2|U|124
6ZXG|1|2|C|125
6ZXG|1|2|G|126
6ZXG|1|2|C|127
6ZXG|1|2|U|128
6ZXG|1|2|C|129
6ZXG|1|2|G|130
*
6ZXG|1|2|C|182
6ZXG|1|2|G|183
6ZXG|1|2|G|184
6ZXG|1|2|G|185
*
6ZXG|1|2|U|214
6ZXG|1|2|G|215
*
6ZXG|1|2|C|310
6ZXG|1|2|C|311
6ZXG|1|2|G|312
*
6ZXG|1|2|C|337
6ZXG|1|2|G|338
6ZXG|1|2|A|339
6ZXG|1|2|C|340
6ZXG|1|2|C|341

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8