J5_6ZXH_004

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

6ZXH|1|2|G|126, 6ZXH|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXH|1|2|G|123
6ZXH|1|2|U|124
6ZXH|1|2|C|125
6ZXH|1|2|G|126
6ZXH|1|2|C|127
6ZXH|1|2|U|128
6ZXH|1|2|C|129
6ZXH|1|2|G|130
*
6ZXH|1|2|C|182
6ZXH|1|2|G|183
6ZXH|1|2|G|184
6ZXH|1|2|G|185
*
6ZXH|1|2|U|214
6ZXH|1|2|G|215
*
6ZXH|1|2|C|310
6ZXH|1|2|C|311
6ZXH|1|2|G|312
*
6ZXH|1|2|C|337
6ZXH|1|2|G|338
6ZXH|1|2|A|339
6ZXH|1|2|C|340
6ZXH|1|2|C|341

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8