J5_7A01_001
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGCUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAGCG
- Length
- 39 nucleotides
- Bulged bases
- 7A01|1|K3|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|U|28
7A01|1|K3|G|29
7A01|1|K3|C|30
7A01|1|K3|U|31
7A01|1|K3|U|32
7A01|1|K3|G|33
7A01|1|K3|U|34
*
7A01|1|K3|A|521
7A01|1|K3|A|522
7A01|1|K3|A|523
7A01|1|K3|U|524
7A01|1|K3|A|525
7A01|1|K3|A|526
7A01|1|K3|C|527
*
7A01|1|K3|G|558
7A01|1|K3|G|559
7A01|1|K3|A|560
7A01|1|K3|A|561
7A01|1|K3|U|562
7A01|1|K3|G|563
7A01|1|K3|A|564
7A01|1|K3|G|565
*
7A01|1|K3|C|585
7A01|1|K3|G|586
7A01|1|K3|A|587
7A01|1|K3|G|588
7A01|1|K3|G|589
7A01|1|K3|A|590
7A01|1|K3|U|591
7A01|1|K3|C|592
7A01|1|K3|C|593
7A01|1|K3|A|594
7A01|1|K3|U|595
*
7A01|1|K3|A|641
7A01|1|K3|U|642
7A01|1|K3|A|643
7A01|1|K3|G|644
7A01|1|K3|C|645
7A01|1|K3|G|646
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain T3
- Ribosomal protein S23
- Chain d3
- Ribosomal protein S9 (Predicted)
- Chain s3
- 40S RIBOSOMAL PROTEIN ES30
Coloring options: