J5_7A01_003
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGCUCGCUCCUCUCCCACUU*AUGCCGACGGG*UGCAUUU*AACCUCGGGCCGAUC*GACG
- Length
- 57 nucleotides
- Bulged bases
- 7A01|1|K3|C|129, 7A01|1|K3|U|135, 7A01|1|K3|C|136, 7A01|1|K3|U|137, 7A01|1|K3|C|142, 7A01|1|K3|U|143, 7A01|1|K3|C|179, 7A01|1|K3|C|182, 7A01|1|K3|G|184, 7A01|1|K3|G|215, 7A01|1|K3|C|216, 7A01|1|K3|U|305, 7A01|1|K3|G|308
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|C|125
7A01|1|K3|G|126
7A01|1|K3|C|127
7A01|1|K3|U|128
7A01|1|K3|C|129
7A01|1|K3|G|130
7A01|1|K3|C|131
7A01|1|K3|U|132
7A01|1|K3|C|133
7A01|1|K3|C|134
7A01|1|K3|U|135
7A01|1|K3|C|136
7A01|1|K3|U|137
7A01|1|K3|C|138
7A01|1|K3|C|139
7A01|1|K3|C|140
7A01|1|K3|A|141
7A01|1|K3|C|142
7A01|1|K3|U|143
7A01|1|K3|U|144
*
7A01|1|K3|A|175
7A01|1|K3|U|176
7A01|1|K3|G|177
7A01|1|K3|C|178
7A01|1|K3|C|179
7A01|1|K3|G|180
7A01|1|K3|A|181
7A01|1|K3|C|182
7A01|1|K3|G|183
7A01|1|K3|G|184
7A01|1|K3|G|185
*
7A01|1|K3|U|214
7A01|1|K3|G|215
7A01|1|K3|C|216
7A01|1|K3|A|217
7A01|1|K3|U|218
7A01|1|K3|U|219
7A01|1|K3|U|220
*
7A01|1|K3|A|301
7A01|1|K3|A|302
7A01|1|K3|C|303
7A01|1|K3|C|304
7A01|1|K3|U|305
7A01|1|K3|C|306
7A01|1|K3|G|307
7A01|1|K3|G|308
7A01|1|K3|G|309
7A01|1|K3|C|310
7A01|1|K3|C|311
7A01|1|K3|G|312
7A01|1|K3|A|313
7A01|1|K3|U|314
7A01|1|K3|C|315
*
7A01|1|K3|G|335
7A01|1|K3|A|336
7A01|1|K3|C|337
7A01|1|K3|G|338
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain b3
- 40S ribosomal protein S6
- Chain c3
- 40S ribosomal protein S8
- Chain j3
- 40S ribosomal protein S4,40S ribosomal protein S4
Coloring options: