J5_7A01_004
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUCUUG*CUUGCCUCU*AAGCGUU*AUGGAAUAGG*CAUGAU
- Length
- 38 nucleotides
- Bulged bases
- 7A01|1|K3|U|689, 7A01|1|K3|C|746, 7A01|1|K3|A|869, 7A01|1|K3|U|871, 7A01|1|K3|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|A|685
7A01|1|K3|U|686
7A01|1|K3|C|687
7A01|1|K3|U|688
7A01|1|K3|U|689
7A01|1|K3|G|690
*
7A01|1|K3|C|741
7A01|1|K3|U|742
7A01|1|K3|U|743
7A01|1|K3|G|744
7A01|1|K3|C|745
7A01|1|K3|C|746
7A01|1|K3|U|747
7A01|1|K3|C|748
7A01|1|K3|U|749
*
7A01|1|K3|A|794
7A01|1|K3|A|795
7A01|1|K3|G|796
7A01|1|K3|C|797
7A01|1|K3|G|798
7A01|1|K3|U|799
7A01|1|K3|U|800
*
7A01|1|K3|A|865
7A01|1|K3|U|866
7A01|1|K3|G|867
7A01|1|K3|G|868
7A01|1|K3|A|869
7A01|1|K3|A|870
7A01|1|K3|U|871
7A01|1|K3|A|872
7A01|1|K3|G|873
7A01|1|K3|G|874
*
7A01|1|K3|C|912
7A01|1|K3|A|913
7A01|1|K3|U|914
7A01|1|K3|G|915
7A01|1|K3|A|916
7A01|1|K3|U|917
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain 32
- 60S RIBOSOMAL PROTEIN EL19
- Chain F3
- ribosomal protein uS15
- Chain G3
- Ribosomal protein S11
- Chain J5
- Ribosomal protein S15a
- Chain P3
- 40S RIBOSOMAL PROTEIN ES7
- Chain b3
- 40S ribosomal protein S6
- Chain j3
- 40S ribosomal protein S4,40S ribosomal protein S4
Coloring options: