J5_7A01_007

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAG*CGCAAUGAAGGUGAAG*CGAG*CGG*CACGAG

Length

33 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|1352
7A01|1|e2|G|1353
7A01|1|e2|A|1354
7A01|1|e2|G|1355
*
7A01|1|e2|C|1384
7A01|1|e2|G|1385
7A01|1|e2|C|1386
7A01|1|e2|A|1387
7A01|1|e2|A|1388
7A01|1|e2|U|1389
7A01|1|e2|G|1390
7A01|1|e2|A|1391
7A01|1|e2|A|1392
7A01|1|e2|G|1393
7A01|1|e2|G|1394
7A01|1|e2|U|1395
7A01|1|e2|G|1396
7A01|1|e2|A|1397
7A01|1|e2|A|1398
7A01|1|e2|G|1399
*
7A01|1|e2|C|1418
7A01|1|e2|G|1419
7A01|1|e2|A|1420
7A01|1|e2|G|1421
*
7A01|1|e2|C|1464
7A01|1|e2|G|1465
7A01|1|e2|G|1466
*
7A01|1|e2|C|1499
7A01|1|e2|A|1500
7A01|1|e2|C|1501
7A01|1|e2|G|1502
7A01|1|e2|A|1503
7A01|1|e2|G|1504

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain S2

60S RIBOSOMAL PROTEIN EL18

Chain a7

60S ribosomal protein L13

Chain q2

uL15

Chain r2

60S ribosomal protein L29

Chain t2

uL4