J5_7A01_009
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7A01|1|e2|A|3908, 7A01|1|e2|A|4394, 7A01|1|e2|U|4395, 7A01|1|e2|G|4451, 7A01|1|e2|U|4452, 7A01|1|e2|U|4531, 7A01|1|e2|U|4555, 7A01|1|e2|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|e2|A|3903
7A01|1|e2|G|3904
7A01|1|e2|A|3905
7A01|1|e2|A|3906
7A01|1|e2|G|3907
7A01|1|e2|A|3908
7A01|1|e2|C|3909
7A01|1|e2|C|3910
*
7A01|1|e2|G|4392
7A01|1|e2|G|4393
7A01|1|e2|A|4394
7A01|1|e2|U|4395
7A01|1|e2|A|4396
7A01|1|e2|A|4397
7A01|1|e2|C|4398
7A01|1|e2|U|4399
7A01|1|e2|G|4400
*
7A01|1|e2|C|4444
7A01|1|e2|U|4445
7A01|1|e2|U|4446
7A01|1|e2|C|4447
7A01|1|e2|G|4448
7A01|1|e2|A|4449
7A01|1|e2|U|4450
7A01|1|e2|G|4451
7A01|1|e2|U|4452
7A01|1|e2|C|4453
*
7A01|1|e2|G|4528
7A01|1|e2|G|4529
7A01|1|e2|U|4530
7A01|1|e2|U|4531
7A01|1|e2|U|4532
7A01|1|e2|A|4533
7A01|1|e2|G|4534
*
7A01|1|e2|U|4552
7A01|1|e2|A|4553
7A01|1|e2|G|4554
7A01|1|e2|U|4555
7A01|1|e2|U|4556
7A01|1|e2|U|4557
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 52
- uL3
- Chain 92
- Uncharacterized protein
- Chain q2
- uL15
- Chain r2
- 60S ribosomal protein L29
- Chain t2
- uL4
Coloring options: