J5_7A01_010
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7A01|1|e2|G|3922, 7A01|1|e2|A|4376, 7A01|1|e2|G|4377, 7A01|1|e2|A|4378, 7A01|1|e2|A|4379, 7A01|1|e2|A|4380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7A01_010 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2993
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7A01|1|e2|U|3920
7A01|1|e2|U|3921
7A01|1|e2|G|3922
7A01|1|e2|A|3923
*
7A01|1|e2|U|4188
7A01|1|e2|U|4189
7A01|1|e2|U|4190
7A01|1|e2|G|4191
*
7A01|1|e2|C|4204
7A01|1|e2|A|4205
*
7A01|1|e2|U|4227
7A01|1|e2|G|4228
*
7A01|1|e2|C|4375
7A01|1|e2|A|4376
7A01|1|e2|G|4377
7A01|1|e2|A|4378
7A01|1|e2|A|4379
7A01|1|e2|A|4380
7A01|1|e2|A|4381
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain 72
- eL21
- Chain 92
- Uncharacterized protein
- Chain F2
- eL42
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain q2
- uL15
- Chain r2
- 60S ribosomal protein L29
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