J5_7A09_004

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGCUC*GGG*UG*CCGAU*ACGA

Length

20 nucleotides

Bulged bases

7A09|1|2|G|126, 7A09|1|2|C|127, 7A09|1|2|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A09|1|2|U|124
7A09|1|2|C|125
7A09|1|2|G|126
7A09|1|2|C|127
7A09|1|2|U|128
7A09|1|2|C|129
*
7A09|1|2|G|183
7A09|1|2|G|184
7A09|1|2|G|185
*
7A09|1|2|U|214
7A09|1|2|G|215
*
7A09|1|2|C|310
7A09|1|2|C|311
7A09|1|2|G|312
7A09|1|2|A|313
7A09|1|2|U|314
*
7A09|1|2|A|336
7A09|1|2|C|337
7A09|1|2|G|338
7A09|1|2|A|339

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain q

40S ribosomal protein S4, X isoform

Chain r

40S ribosomal protein S6

Chain t

40S ribosomal protein S8