J5_7A09_009
3D structure
- PDB id
- 7A09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGGAUCUUGG*CCUCUCGGCCGAAGCGUU*AUGGAAUAGG*CAUGAUUAAGAG*CAUUA
- Length
- 55 nucleotides
- Bulged bases
- 7A09|1|2|U|688, 7A09|1|2|U|871, 7A09|1|2|G|873, 7A09|1|2|A|913, 7A09|1|2|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A09|1|2|U|682
7A09|1|2|G|683
7A09|1|2|G|684
7A09|1|2|A|685
7A09|1|2|U|686
7A09|1|2|C|687
7A09|1|2|U|688
7A09|1|2|U|689
7A09|1|2|G|690
7A09|1|2|G|691
*
7A09|1|2|C|739
7A09|1|2|C|746
7A09|1|2|U|747
7A09|1|2|C|748
7A09|1|2|U|749
7A09|1|2|C|750
7A09|1|2|G|751
7A09|1|2|G|752
7A09|1|2|C|791
7A09|1|2|C|792
7A09|1|2|G|793
7A09|1|2|A|794
7A09|1|2|A|795
7A09|1|2|G|796
7A09|1|2|C|797
7A09|1|2|G|798
7A09|1|2|U|799
7A09|1|2|U|800
*
7A09|1|2|A|865
7A09|1|2|U|866
7A09|1|2|G|867
7A09|1|2|G|868
7A09|1|2|A|869
7A09|1|2|A|870
7A09|1|2|U|871
7A09|1|2|A|872
7A09|1|2|G|873
7A09|1|2|G|874
*
7A09|1|2|C|912
7A09|1|2|A|913
7A09|1|2|U|914
7A09|1|2|G|915
7A09|1|2|A|916
7A09|1|2|U|917
7A09|1|2|U|918
7A09|1|2|A|919
7A09|1|2|A|920
7A09|1|2|G|921
7A09|1|2|A|922
7A09|1|2|G|923
*
7A09|1|2|C|1019
7A09|1|2|A|1020
7A09|1|2|U|1021
7A09|1|2|U|1022
7A09|1|2|A|1023
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S15a
- Chain R
- 40S ribosomal protein S27
- Chain j
- 40S ribosomal protein S23
- Chain m
- 40S ribosomal protein S13
- Chain n
- 40S ribosomal protein S11
- Chain q
- 40S ribosomal protein S4, X isoform
- Chain s
- 40S ribosomal protein S7
Coloring options: