J5_7A1G_002

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

7A1G|1|2|G|540, 7A1G|1|2|A|541, 7A1G|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A1G|1|2|C|31
7A1G|1|2|U|32
7A1G|1|2|U|33
7A1G|1|2|G|34
7A1G|1|2|U|35
*
7A1G|1|2|A|473
7A1G|1|2|A|474
7A1G|1|2|A|475
7A1G|1|2|U|476
7A1G|1|2|A|477
7A1G|1|2|A|478
7A1G|1|2|C|479
*
7A1G|1|2|G|509
7A1G|1|2|G|510
7A1G|1|2|A|511
7A1G|1|2|A|512
7A1G|1|2|U|513
7A1G|1|2|G|514
7A1G|1|2|A|515
7A1G|1|2|G|516
*
7A1G|1|2|C|536
7A1G|1|2|G|537
7A1G|1|2|A|538
7A1G|1|2|G|539
7A1G|1|2|G|540
7A1G|1|2|A|541
7A1G|1|2|A|542
7A1G|1|2|C|543
7A1G|1|2|A|544
7A1G|1|2|A|545
7A1G|1|2|U|546
*
7A1G|1|2|A|592
7A1G|1|2|U|593
7A1G|1|2|A|594
7A1G|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A

Chain z

Eukaryotic translation initiation factor 3 subunit J