J5_7A1G_006

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGA*UAAUGAU

Length

39 nucleotides

Bulged bases

7A1G|1|2|U|639, 7A1G|1|2|U|694, 7A1G|1|2|C|696, 7A1G|1|2|C|697, 7A1G|1|2|U|813, 7A1G|1|2|G|815, 7A1G|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A1G|1|2|A|636
7A1G|1|2|C|637
7A1G|1|2|U|638
7A1G|1|2|U|639
7A1G|1|2|U|640
7A1G|1|2|G|641
*
7A1G|1|2|U|693
7A1G|1|2|U|694
7A1G|1|2|U|695
7A1G|1|2|C|696
7A1G|1|2|C|697
7A1G|1|2|U|698
7A1G|1|2|U|699
7A1G|1|2|C|700
*
7A1G|1|2|G|738
7A1G|1|2|G|739
7A1G|1|2|A|740
7A1G|1|2|C|741
7A1G|1|2|U|742
7A1G|1|2|U|743
7A1G|1|2|U|744
*
7A1G|1|2|A|807
7A1G|1|2|U|808
7A1G|1|2|A|809
7A1G|1|2|G|810
7A1G|1|2|A|811
7A1G|1|2|A|812
7A1G|1|2|U|813
7A1G|1|2|A|814
7A1G|1|2|G|815
7A1G|1|2|G|816
7A1G|1|2|A|817
*
7A1G|1|2|U|854
7A1G|1|2|A|855
7A1G|1|2|A|856
7A1G|1|2|U|857
7A1G|1|2|G|858
7A1G|1|2|A|859
7A1G|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain U

40S ribosomal protein S7-A

Chain X

40S ribosomal protein S11-A

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A