J5_7AC7_008

3D structure

PDB id

7AC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7AC7_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1326

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7AC7|1|2|C|36
7AC7|1|2|U|37
7AC7|1|2|G|38
7AC7|1|2|G|39
*
7AC7|1|2|C|403
7AC7|1|2|G|404
7AC7|1|2|U|405
7AC7|1|2|G|406
*
7AC7|1|2|C|436
7AC7|1|2|U|437
7AC7|1|2|U|438
7AC7|1|2|U|439
7AC7|1|2|C|440
7AC7|1|2|A|441
7AC7|1|2|G|442
*
7AC7|1|2|C|492
7AC7|1|2|A|493
7AC7|1|2|G|494
7AC7|1|2|A|495
7AC7|1|2|A|496
7AC7|1|2|G|497
7AC7|1|2|A|498
7AC7|1|2|A|499
7AC7|1|2|G|500
*
7AC7|1|2|C|545
7AC7|1|2|A|546
7AC7|1|2|A|547
7AC7|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12