J5_7ACR_007

3D structure

PDB id

7ACR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of post-translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ACR_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1034

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7ACR|1|2|C|36
7ACR|1|2|U|37
7ACR|1|2|G|38
7ACR|1|2|G|39
*
7ACR|1|2|C|403
7ACR|1|2|G|404
7ACR|1|2|U|405
7ACR|1|2|G|406
*
7ACR|1|2|C|436
7ACR|1|2|U|437
7ACR|1|2|U|438
7ACR|1|2|U|439
7ACR|1|2|C|440
*
7ACR|1|2|G|497
7ACR|1|2|A|498
7ACR|1|2|A|499
7ACR|1|2|G|500
*
7ACR|1|2|C|545
7ACR|1|2|A|546
7ACR|1|2|A|547
7ACR|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12