3D structure

PDB id
7AFL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7AFL_002 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.1199
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

7AFL|1|A|C|36
7AFL|1|A|U|37
7AFL|1|A|G|38
7AFL|1|A|G|39
*
7AFL|1|A|C|403
7AFL|1|A|G|404
7AFL|1|A|U|405
7AFL|1|A|G|406
*
7AFL|1|A|C|436
7AFL|1|A|U|437
7AFL|1|A|U|438
7AFL|1|A|U|439
7AFL|1|A|C|440
7AFL|1|A|A|441
7AFL|1|A|G|442
*
7AFL|1|A|C|492
7AFL|1|A|A|493
7AFL|1|A|G|494
7AFL|1|A|A|495
7AFL|1|A|A|496
7AFL|1|A|G|497
7AFL|1|A|A|498
7AFL|1|A|A|499
7AFL|1|A|G|500
*
7AFL|1|A|C|545
7AFL|1|A|A|546
7AFL|1|A|A|547
7AFL|1|A|G|548

Current chains

Chain A
16SrRNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain L
30S ribosomal protein S12

Coloring options:


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