J5_7AFL_003

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCAAG*CGGACGGG*CAC*GAC*GGCAGC

Length

25 nucleotides

Bulged bases

7AFL|1|A|A|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AFL|1|A|G|57
7AFL|1|A|C|58
7AFL|1|A|A|59
7AFL|1|A|A|60
7AFL|1|A|G|61
*
7AFL|1|A|C|106
7AFL|1|A|G|107
7AFL|1|A|G|108
7AFL|1|A|A|109
7AFL|1|A|C|110
7AFL|1|A|G|111
7AFL|1|A|G|112
7AFL|1|A|G|113
*
7AFL|1|A|C|314
7AFL|1|A|A|315
7AFL|1|A|C|316
*
7AFL|1|A|G|337
7AFL|1|A|A|338
7AFL|1|A|C|339
*
7AFL|1|A|G|350
7AFL|1|A|G|351
7AFL|1|A|C|352
7AFL|1|A|A|353
7AFL|1|A|G|354
7AFL|1|A|C|355

Current chains

Chain A

16SrRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20