J5_7AS8_001

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7AS8|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7AS8_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0967

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7AS8|1|A|C|47
7AS8|1|A|G|48
7AS8|1|A|A|49
7AS8|1|A|U|50
7AS8|1|A|G|51
7AS8|1|A|A|52
7AS8|1|A|A|53
7AS8|1|A|G|54
*
7AS8|1|A|C|115
7AS8|1|A|G|116
7AS8|1|A|A|117
7AS8|1|A|A|118
7AS8|1|A|U|119
7AS8|1|A|G|120
*
7AS8|1|A|C|129
7AS8|1|A|A|130
*
7AS8|1|A|U|149
7AS8|1|A|A|150
7AS8|1|A|U|151
*
7AS8|1|A|A|178
7AS8|1|A|A|179
7AS8|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L34