J5_7ASM_001

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7ASM|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ASM_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0912

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ASM|1|A|C|47
7ASM|1|A|G|48
7ASM|1|A|A|49
7ASM|1|A|U|50
7ASM|1|A|G|51
7ASM|1|A|A|52
7ASM|1|A|A|53
7ASM|1|A|G|54
*
7ASM|1|A|C|115
7ASM|1|A|G|116
7ASM|1|A|A|117
7ASM|1|A|A|118
7ASM|1|A|U|119
7ASM|1|A|G|120
*
7ASM|1|A|C|129
7ASM|1|A|A|130
*
7ASM|1|A|U|149
7ASM|1|A|A|150
7ASM|1|A|U|151
*
7ASM|1|A|A|178
7ASM|1|A|A|179
7ASM|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34