3D structure

PDB id
7ASM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 50S after 30 minutes incubation at 37C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.48 Å

Loop

Sequence
CGAGUU*AGAC*GUUC*GC*GAGAAUG
Length
23 nucleotides
Bulged bases
7ASM|1|A|U|1293
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7ASM_003 not in the Motif Atlas
Homologous match to J5_4WF9_004
Geometric discrepancy: 0.079
The information below is about J5_4WF9_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

7ASM|1|A|C|627
7ASM|1|A|G|628
7ASM|1|A|A|629
7ASM|1|A|G|630
7ASM|1|A|U|631
7ASM|1|A|U|632
*
7ASM|1|A|A|713
7ASM|1|A|G|714
7ASM|1|A|A|715
7ASM|1|A|C|716
*
7ASM|1|A|G|854
7ASM|1|A|U|855
7ASM|1|A|U|856
7ASM|1|A|C|857
*
7ASM|1|A|G|1234
7ASM|1|A|C|1235
*
7ASM|1|A|G|1288
7ASM|1|A|A|1289
7ASM|1|A|G|1290
7ASM|1|A|A|1291
7ASM|1|A|A|1292
7ASM|1|A|U|1293
7ASM|1|A|G|1294

Current chains

Chain A
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain E
50S ribosomal protein L4
Chain J
50S ribosomal protein L15
Chain O
50S ribosomal protein L20
Chain P
50S ribosomal protein L21

Coloring options:


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