J5_7ASP_009

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAGA*UCGGUCC

Length

39 nucleotides

Bulged bases

7ASP|1|Y|A|2089, 7ASP|1|Y|A|2475, 7ASP|1|Y|U|2476, 7ASP|1|Y|U|2533, 7ASP|1|Y|U|2612, 7ASP|1|Y|U|2636, 7ASP|1|Y|C|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ASP|1|Y|G|2084
7ASP|1|Y|A|2085
7ASP|1|Y|A|2086
7ASP|1|Y|A|2087
7ASP|1|Y|G|2088
7ASP|1|Y|A|2089
7ASP|1|Y|C|2090
7ASP|1|Y|C|2091
*
7ASP|1|Y|G|2473
7ASP|1|Y|G|2474
7ASP|1|Y|A|2475
7ASP|1|Y|U|2476
7ASP|1|Y|A|2477
7ASP|1|Y|A|2478
7ASP|1|Y|C|2479
7ASP|1|Y|A|2480
*
7ASP|1|Y|U|2527
7ASP|1|Y|C|2528
7ASP|1|Y|G|2529
7ASP|1|Y|A|2530
7ASP|1|Y|U|2531
7ASP|1|Y|G|2532
7ASP|1|Y|U|2533
7ASP|1|Y|C|2534
*
7ASP|1|Y|G|2609
7ASP|1|Y|G|2610
7ASP|1|Y|U|2611
7ASP|1|Y|U|2612
7ASP|1|Y|C|2613
7ASP|1|Y|A|2614
7ASP|1|Y|G|2615
7ASP|1|Y|A|2616
*
7ASP|1|Y|U|2632
7ASP|1|Y|C|2633
7ASP|1|Y|G|2634
7ASP|1|Y|G|2635
7ASP|1|Y|U|2636
7ASP|1|Y|C|2637
7ASP|1|Y|C|2638

Current chains

Chain Y

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain J

50S ribosomal protein L15

Chain Z

50S ribosomalprotein L32p