J5_7AZY_005

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

AAAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

7AZY|1|E|A|2404, 7AZY|1|E|A|2817, 7AZY|1|E|U|2978, 7AZY|1|E|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AZY|1|E|A|2399
7AZY|1|E|A|2400
7AZY|1|E|A|2401
7AZY|1|E|A|2402
7AZY|1|E|G|2403
7AZY|1|E|A|2404
7AZY|1|E|C|2405
7AZY|1|E|C|2406
*
7AZY|1|E|G|2815
7AZY|1|E|G|2816
7AZY|1|E|A|2817
7AZY|1|E|U|2818
7AZY|1|E|A|2819
7AZY|1|E|A|2820
7AZY|1|E|C|2821
7AZY|1|E|U|2822
7AZY|1|E|G|2823
*
7AZY|1|E|C|2867
7AZY|1|E|U|2868
7AZY|1|E|U|2869
7AZY|1|E|C|2870
7AZY|1|E|G|2871
7AZY|1|E|A|2872
7AZY|1|E|U|2873
7AZY|1|E|G|2874
7AZY|1|E|U|2875
7AZY|1|E|C|2876
*
7AZY|1|E|G|2951
7AZY|1|E|G|2952
7AZY|1|E|U|2953
7AZY|1|E|U|2954
7AZY|1|E|U|2955
7AZY|1|E|A|2956
7AZY|1|E|G|2957
*
7AZY|1|E|U|2975
7AZY|1|E|A|2976
7AZY|1|E|G|2977
7AZY|1|E|U|2978
7AZY|1|E|U|2979
7AZY|1|E|U|2980

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L29

Chain l

60S ribosomal protein L3

Chain o

60S ribosomal protein L10

Chain p

60S ribosomal protein L4-A

Chain x

60S ribosomal protein L2-A